Oops! It appears that you have disabled your Javascript. In order for you to see this page as it is meant to appear, we ask that you please re-enable your Javascript!

研究業績

査読論文

  • Murakami, Y. and Mizuguchi, K. (2017), "Making protein-protein interaction prediction more reliable with a large-scale dataset at the proteome level", Journal of Bioinformatics and Neuroscience, vol.3, issue.3, pp.91-98.
  • Murakami, Y. and Mizuguchi, K. (2017), "PSOPIA: Toward more reliable protein-protein interactions prediction from sequence information", Intelligent Informatics and Biomedical Sciences (ICIIBMS), 2017 International Conference on, doi: 10.1109/ICIIBMS.2017.8279749.
  • Murakami, Y et al. (2017), "Network analysis and in silico prediciton of protein-protein interactions with applications in drug discovery", Current Opinion in Structural Biology, vol.44, pp.134-142, doi: 10.1016/j.sbi.2017.02.005.
  • Murakami, Y et al. (2017), "Network analysis and in silico prediciton of protein-protein interactions with applications in drug discovery", Current Opinion in Structural Biology, (in press).
  • Murakami, Y et al. (2016), "NLDB: a database for 3D protein–ligand interactions in enzymatic reactions", Journal of Structural and Functional Genomics, vol.17, issue.4. pp.101-110, doi:10.1007/s10969-016-9206-0.
  • Chen, Y.A et al. (2014), "Brefeldin A-inhibited guanine nucleotide-exchange protein 3 (BIG3) is predicted to interact with its partner through an ARM-type alpha helical structure", BMC Research Notes, 7:435, doi:10.1186/1756-0500-7-435.
  • Murakami, Y et al. (2014), "Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators", BMC Bioinformatics, 15:213, doi:10.1186/1471-2105-15-213.
  • Lensink, M.F et al., (2013), "Blind Prediction of Interfacial Water Positions in CAPRI", Proteins: Structure, Function and Bioinformaces, 82(4), pp.620-632, doi:10.1002/prot.24439.
  • Yoshimaru, T et al. (2013), "Targeting BIG3-PHB2 interaction to overcome tamoxifen resistance in breast cancer cells", Nature Communication, 4:2443, doi:10.1038/ncomms3443.
  • Murakami, Y et al. (2013), "Exhaustive comparison and classification of ligand-binding surfaces in proteins", Protein Science, 22(10), pp.1379-1391, doi:10.1002/pro.2329
  • Kanamori et al. (2013), "Biomolecular Forms and Functions", in Bansal,M. and Srlnlvasan,N. (eds.), World Scientific, Singapore, pp.160-172.
  • Murakami, Y. and Mizuguchi, K. (2010), "Applying the Naive Byes classifier with kernel density estimation to the prediction of protein-protein interaction sites", Bioinformatics, 26(15), pp.1841-1848, doi:10.1093/bioinformatics/btq302.
  • Murakami, Y et al. (2010), "Sequence-based prediction of protein-protein interaction sites using a Naïve Bayes classifier with kernel density estimation", The proceedings of the 2010 Annual Conference of the Japanese Society for Bioinformatics, pp.1379-1391.
  • Murakami, Y.* and Spriggs, R.V* et al. (2010), "PiRaNhA: A server for the computational prediction of RNA-binding residues in protein sequences", Nucleic Acid Research, 38(Web Server Issue): W412-W416, doi:10.1093/nar/gkq474. * 共同筆頭著者
  • Spriggs, R.V.* and Murakami, Y* et al. (2009), "Protein Function annotation from sequence: prediction of specific RNA-binding residues", Bioinformatics, 25(12), pp.1492-1497, doi:10.1093/bioinformatics/btp257. * 共同筆頭著者
  • Murakami, Y et al. (2008), "Development of a fast similarity search method for the molecular surface database", The proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics, pp.026.1-026.2.
  • Kanamori, K et al. (2007), "Docking of protein molecular surfaces with evolutionary trace analysis", Proteins: Structural, Function, and Bioinformatics, vol.69, issue.4, pp.832-838, doi:10.1002/prot.21737.
  • Kinoshita, K et al. (2007), "eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape", Nucleic Acid Research, 35(Web Server Issue), W398-W402, doi:10.1093/nar/gkm351.
  • Jones, S. and Murakami, Y. (2007), "Bioinformatics Research and Development, Lecture Notes in Computer Science, Volume 4414", in Hochreiter,S. and Wangner,S. (eds.), Springer, pp.303-313.
  • Murakami, Y et al. (2006), "SHARP2: protein-protein interaction predictions using patch analysis", Bioinformatics, 22(14), pp.1794-1795, doi:10.1093/bioinformatics/btl171.

論文・著書など

  • 村上洋一、水口賢司(2018)「in silicoを用いたタンパク質間相互作用(PPI)の網羅的解析と創薬応用」 『In silico創薬におけるスクリーニングの高速化・高精度化技術』(株)技術情報協会>
  • Kanamori et al. (2013), "Biomolecular Forms and Functions", in Bansal,M. and Srlnlvasan,N. (eds.), World Scientific, Singapore, pp.160-172.
  • Murakami, Y et al. (2010), "Sequence-based prediction of protein-protein interaction sites using a Naïve Bayes classifier with kernel density estimation", The proceedings of the 2010 Annual Conference of the Japanese Society for Bioinformatics, pp.1379-1391.
  • Murakami, Y et al. (2008), "Development of a fast similarity search method for the molecular surface database", The proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics, pp.026.1-026.2.
  • Jones, S. and Murakami, Y. (2007), "Bioinformatics Research and Development, Lecture Notes in Computer Science, Volume 4414", in Hochreiter,S. and Wangner,S. (eds.), Springer, pp.303-313.

学会発表・講演など

  • 「PSOPIA: Toward more reliable protein-protein interactions prediction from sequence information」
    International Conference on Intelligent Informatics and Biomedical Sciences (ICIIBMS)(於沖縄科学技術大学院大学), 2017.11
  • 「A machine learning approach for predicting protein-protein interactions」
    大阪大学蛋白質研究所セミナー (於大阪大学 蛋白質研究所), 2015.3
  • 「Exhaustive comparison of representative partial surfaces of ligand binding sites in proteins」
    2011年日本バイオインフォマティクス学会年会 (於神戸国際会議場), 2011.11
  • 「PiRaNhA: a server for the prediction of RNA-binding residues in protein sequences」
    日英シンポジウム(於千里ライフサイエンスセンター), 2008,9
  • 「An application of genetic algorithm to a backward evolution of cellular automata」
    1999 International Symposium on Nonlinear Theory and its Applications NOLTA'99 (於ハワイ島,アメリカ), 1999.11

Copyrighted Image